Cyclosporin A

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Cyclosporin A
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Cyclosporin A
Cyclosporin A.png
Identifiers
Leadscope Id LS-257
CAS 59865-13-3
DrugBank DB00091
ChemSpider 4447449
UNII 83HN0GTJ6D
ChEBI 15377
Pathway DBs
KEGG D00184
Assay DBs
PubChem CID 5284373
ChEMBL 160
Omics DBs
Properties
pKa 9.45
ToxCast Accepted no
Toxic Effect Cholestasis
ToxBank Accepted no
Target cyclophilin


Executive Summary

Compound Cyclosporin A
Toxicities Cholestasis, renal fibrosis
Mechanisms Not known.
Comments Cyclosporin A is a large natural product with multiple functional groups that may potentially relate to toxicity. We found no clear description of the mechanism of hepatotoxicity. The chemical structure and pharmacological mechanism of action are relatively unique, which means that it may be difficult to generalize results to other compounds or to identify controls for ‘omics experiments. In addition, the compound binds to glass and plastic, making handling difficult. These features argue against cyclosporine A as a standard.
Recommended as Standard No

Summary Information

The table listed below contains a summarized listing of toxic effect information leveraged from the 6th European Framework Programme project LIINTOP. For a complete listing of the Gold Compound evaluation criteria please see the Gold Compound Evaluation and Comments immediately following the summary table below.

SMILES C1(N[C@H](C(N(CC(N([C@H](C(N[C@@H](C(C)C)C(=O)N([C@H](C(N[C@@H](C)C(=O)N[C@@H](C(N([C@@H](C(N([C@H](C(N([C@@H](CC(C)C)C(N([C@H]1[C@@H]([C@@H](\C=C\C)C)O)C)=O)C)=O)CC(C)C)C)=O)CC(C)C)C)=O)C)=O)CC(C)C)C)=O)CC(C)C)C)=O)C)=O)CC)=O
InChI

InChI=1S/C62H111N11O12/c1-25-27-28-40(15)52(75)51-56(79)65-43(26-2)58(81)67(18)33-48(74)68(19)44(29-34(3)4)55(78)66-49(38(11)12)61(84)69(20)45(30-35(5)6)54(77)63-41(16)53(76)64-42(17)57(80)70(21)46(31-36(7)8)59(82)71(22)47(32-37(9)10)60(83)72(23)50(39(13)14)62(85)73(51)24/h25,27,34-47,49-52,75H,26,28-33H2,1-24H3,(H,63,77)(H,64,76)(H,65,79)(H,66,78)

InChI-Key

PMATZTZNYRCHOR-UHFFFAOYSA-N

Supplier Sigma Aldrich
Summary Hepatotoxic Effects from the LIINTOP FP6 Program
Hepatocellular necrosis.gif Apoptosis.gif Transporter inhibition.gif Cholestatic.gif Steatotic.gif Phospholipidosis.gif Hepatocyte function.gif Mithochondria impairment.gif Oxidative stress.gif DNA synthesis genotoxicity.gif Covalent binding.gif Idiosyncrasia metabolic.gif Idiosyncrasia immune.gif Bioactivation required.gif LIINTOP severity.gif References
+ + 3

[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25]

Gold Compound Evaluation and Comments

The following table is organized into four main sections and provides a detailed assessment by the Gold Compound Working Group for the use of this compound as a standard hepatotoxin. The table's four sections (collapsed by default but will expand when the "show" link is clicked) contains detailed information for the core set of SEURAT compound acceptance criteria.

Standard to Meet Compound Assessment
Criteria Notes
1.
The in vivo therapeutic window is used to estimate an appropriate concentration for in vitro toxicity assays. This in vitro concentration should also be consistent with the exposure implied by pharmacokinetics parameters.
2.
We prefer compounds that require metabolic activation, although standards that are active in themselves will be accepted if they have otherwise valuable properties. We require knowing the active metabolite, and we prefer compounds where the metabolite is stable and can be independently tested in order to verify the mechanism of toxicity as well as of metabolic activation in the test cell line.
3.
Literature data for at least one, but not necessarily all, of the ‘omics datasets is desired. This requirement can be waived in special cases.
4.
The IC50’s for in vitro efficacy and toxicity should be consistent with the therapeutic ratio observed in the clinic. These parameters will be dependent on specific cell type and culture conditions, but differences of more than 30-fold in the in vitro vs. in vivo therapeutic ratios should be considered suspect and carefully justified.
5.
This is not a requirement, but compounds utilized in the EPA testing program can be assumed to have physical properties verified to be suitable for in vitro cellular assays.
6.
Sparing soluble compounds may be assayed for solubility in serum and the percent serum used specified here.
7.
This property will be measured when a sample of compound becomes available.

Proprietary Toxicity Literature Report

The toxicity literature report contains proprietary information and references for studies performed on this compound relevant to liver toxicity findings and is restricted for use within the SEURAT program only.

Toxicity Report

Human Adverse Events

The following data table has been mined from the Adverse Events Reporting System (AERS) of the US FDA. Significant human liver events. The first column ("# Reports") is the number of reports found for the corresponding adverse event reported in the third column ("Adverse Event"). The second column ("Report:Baseline Ratio") is ratio calculated from the number of reports ("# Reports") divided by a calculated expected statistical baseline number of reports.

# Reports Report:Baseline Ratio Adverse Event
11 10.327 acute graft versus host disease in liver
4 4.39262 adenoviral hepatitis
1 26.5997 bacillary angiomatosis
12 3.37576 bile duct stenosis
10 17.7332 biliary anastomosis complication
9 3.25465 biliary dilatation
6 15.9598 biliary ischaemia
2 7.1462 biliary sepsis
6 42.2467 cholangitis chronic
10 3.28843 cholecystitis chronic
2 4.83632 cholestasis of pregnancy
13 6.51082 complications of transplanted liver
1 10.8817 congenital absence of bile ducts
9 12.0368 cytomegalovirus hepatitis
1 26.5997 dilatation intrahepatic duct congenital
7 5.62344 gallbladder enlargement
2 4.39262 gallbladder non-functioning
2 5.83897 haemobilia
3 4.46083 hepatic artery aneurysm
4 16.5102 hepatic artery occlusion
14 5.48538 hepatic artery thrombosis
6 7.18193 hepatic cancer metastatic
3 47.8795 hepatic cyst infection
4 23.9398 hepatic neoplasm malignant non-resectable
9 21.3325 hepatic neoplasm malignant recurrent
5 8.19855 hepatic vein occlusion
1 47.8795 hepatitis g
1 14.9624 hepatitis infectious mononucleosis
9 3.56718 hepatitis viral
1 9.57591 hepatoblastoma
9 3.66425 hepatorenal failure
1 11.3999 hyperphosphatasaemia
1 8.54992 leukaemic infiltration hepatic
15 3.35604 liver abscess
107 12.6061 liver transplant rejection
2 3.65493 nodular regenerative hyperplasia
1 12.5999 oedema due to hepatic disease
7 9.85755 peliosis hepatis
5 29.9247 portal vein occlusion
4 25.8808 portal vein stenosis
42 6.98728 venoocclusive liver disease

FDA and Label Information

The following link will display all of the currently approved FDA drug products on the market. The web page will contain a table listing all current products by their respective Tradenames and primary active ingredients. The list is navigable by simply clicking on the product of interest, which will in turn list all of the NDA's and ANDA's associated with that product. From here users can click on a specific NDA or ANDA and see documents that have been submitted for the product that the FDA has made available via their website. The types of documents include approval history, letters, reviews and labels.
FDA Approved Products

This next url will perform a search in the FDA's system for all labels for products that contain "Cyclosporin A" as an active ingredient.
FDA Label Search

PubMed references

The following resource link will perform a PubMed query for the terms "Cyclosporin A" and "liver toxicity".
Cyclosporin A Search

References

  1. Cullen, J.M., 2005. Mechanistic classification of liver injury. Toxicol. Pathol. 33, 6–8.
  2. Geier, A., Dietrich, C.G., Gerloff, T., Haendly, J., Kullak-Ublick, G.A., Stieger, B., Meier, P.J., Matern, S., Gartung, C., 2003. Regulation of basolateral organic anion transporters in ethinylestradiol-induced cholestasis in the rat. Biochim. Biophys. Acta 1609, 87–94.
  3. Loranger, A., Barriault, C., Yousef, I.M., Tuchweber, B., 1996. Structural and functional alterations of hepatocytes during transient phalloidin-induced cholestasis in the rat. Toxicol. Appl. Pharmacol. 137, 100–111.
  4. Pauli-Magnus, C., Meier, P.J., 2006. Hepatobiliary transporters and drug-induced cholestasis. Hepatology 44, 778–787.
  5. Rolo, A.P., Oliveira, P.J., Seica, R., Santos, M.S., Moreno, A.J., Palmeira, C.M., 2002. Disruption of mitochondrial calcium homeostasis after chronic alphanaphthylisothiocyanate administration: relevance for cholestasis. J. Invest. Med. 50, 193–200.
  6. Roman, I.D., Fernandez-Moreno, M.D., Fueyo, J.A., Roma, M.G., Coleman, R., 2003. Cyclosporin A induced internalization of the bile salt export pump in isolated rat hepatocyte couplets. Toxicol. Sci. 71, 276–281.
  7. Sokol, R.J., Dahl, R., Devereaux, M.W., Yerushalmi, B., Kobak, G.E., Gumpricht, E., 2005. Human hepatic mitochondria generate reactive oxygen species and undergo the permeability transition in response to hydrophobic bile acids. J. Pediatr. Gastroenterol. Nutr. 41, 235–243.
  8. Thibault, N., Claude, J.R., Ballet, F., 1992. Actin filament alteration as a potential marker for cholestasis: a study in isolated rat hepatocyte couplets. Toxicology 73, 269–279.
  9. Zollner, G., Trauner, M., 2008. Mechanisms of cholestasis. Clin. Liver Dis. 12, 1–26 (vii).
  10. Geier, A., Dietrich, C.G., Gerloff, T., Haendly, J., Kullak-Ublick, G.A., Stieger, B., Meier, P.J., Matern, S., Gartung, C., 2003. Regulation of basolateral organic anion transporters in ethinylestradiol-induced cholestasis in the rat. Biochim. Biophys. Acta 1609, 87–94.
  11. Loranger, A., Barriault, C., Yousef, I.M., Tuchweber, B., 1996. Structural and functional alterations of hepatocytes during transient phalloidin-induced cholestasis in the rat. Toxicol. Appl. Pharmacol. 137, 100–111.
  12. Marion, T.L., Leslie, E.M., Brouwer, K.L., 2007. Use of sandwich-cultured hepatocytes to evaluate impaired bile acid transport as a mechanism of drug-induced hepatotoxicity. Mol. Pharm. 4, 911–918.
  13. Palmeira, C.M., Rolo, A.P., 2004. Mitochondrially-mediated toxicity of bile acids. Toxicology 203, 1–15.
  14. Pauli-Magnus, C., Meier, P.J., 2006. Hepatobiliary transporters and drug-induced cholestasis. Hepatology 44, 778–787.
  15. Rolo, A.P., Oliveira, P.J., Seica, R., Santos, M.S., Moreno, A.J., Palmeira, C.M., 2002. Disruption of mitochondrial calcium homeostasis after chronic alphanaphthylisothiocyanate administration: relevance for cholestasis. J. Invest. Med. 50, 193–200.
  16. Roman, I.D., Fernandez-Moreno, M.D., Fueyo, J.A., Roma, M.G., Coleman, R., 2003. Cyclosporin A induced internalization of the bile salt export pump in isolated rat hepatocyte couplets. Toxicol. Sci. 71, 276–281.
  17. Sokol, R.J., Dahl, R., Devereaux, M.W., Yerushalmi, B., Kobak, G.E., Gumpricht, E., 2005. Human hepatic mitochondria generate reactive oxygen species and undergo the permeability transition in response to hydrophobic bile acids. J. Pediatr. Gastroenterol. Nutr. 41, 235–243.
  18. Thibault, N., Claude, J.R., Ballet, F., 1992. Actin filament alteration as a potential marker for cholestasis: a study in isolated rat hepatocyte couplets. Toxicology 73, 269–279.
  19. Zollner, G., Trauner, M., 2008. Mechanisms of cholestasis. Clin. Liver Dis. 12, 1–26 (vii).
  20. Criddle, D.N., Gillies, S., Baumgartner-Wilson, H.K., Jaffar, M., Chinje, E.C., Passmore, S., Chvanov, M., Barrow, S., Gerasimenko, O.V., Tepikin, A.V., Sutton, R., Petersen, O.H., 2006. Menadione-induced reactive oxygen species generation via redox cycling promotes apoptosis of murine pancreatic acinar cells. J. Biol. Chem. 281, 40485–40492.
  21. Hanley, P.J., Ray, J., Brandt, U., Daut, J., 2002. Halothane, isoflurane and sevoflurane inhibit NADH:ubiquinone oxidoreductase (complex I) of cardiac mitochondria. J. Physiol. 544, 687–693.
  22. Moridani, M.Y., Cheon, S.S., Khan, S., O’Brien, P.J., 2003. Metabolic activation of 3- hydroxyanisole by isolated rat hepatocytes. Chem. Biol. Interact. 142, 317–333.
  23. Pereira, C.V., Moreira, A.C., Pereira, S.P., Machado, N.G., Carvalho, F.S., Sardao, V.A., Oliveira, P.J., 2009. Investigating drug-induced mitochondrial toxicity: a biosensor to increase drug safety? Curr. Drug Saf. 4, 34–54.
  24. Sanz, A., Caro, P., Gomez, J., Barja, G., 2006. Testing the vicious cycle theory of mitochondrial ROS production: effects of H2O2 and cumene hydroperoxide treatment on heart mitochondria. J. Bioenerg. Biomembr. 38, 121–127.
  25. Yuan, L., Kaplowitz, N., 2009. Glutathione in liver diseases and hepatotoxicity. Mol. Aspects Med. 30, 29–41.
  26. Toxicity should be observed clinically with higher frequency at higher doses. If toxicity is idiosyncratic due to defects in metabolism that result in higher than normal exposure, then this toxicity is still considered to fit our definition of dose-dependent toxicity. If toxicity is idiosyncratic due to an increased sensitivity of the organ to the toxin - due to disease, genetics, or co-administered drug, for example - then this toxicity is outside our area of interest.
  27. The in vivo therapeutic window is used to estimate an appropriate concentration for in vitro toxicity assays. This in vitro concentration should also be consistent with the exposure implied by pharmacokinetics parameters.
  28. 28.0 28.1 We prefer compounds that require metabolic activation, although standards that are active in themselves will be accepted if they have otherwise valuable properties. We require knowing the active metabolite, and we prefer compounds where the metabolite is stable and can be independently tested in order to verify the mechanism of toxicity as well as of metabolic activation in the test cell line.
  29. Literature data for at least one, but not necessarily all, of the ‘omics datasets is desired. This requirement can be waived in special cases.
  30. 30.0 30.1 30.2 30.3 30.4 The IC50’s for in vitro efficacy and toxicity should be consistent with the therapeutic ratio observed in the clinic. These parameters will be dependent on specific cell type and culture conditions, but differences of more than 30-fold in the in vitro vs. in vivo therapeutic ratios should be considered suspect and carefully justified.
  31. This is not a equirement, but compounds utilized in the EPA testing program can be assumed to have physical properties verified to be suitable for in vitro cellular assays.
  32. Sparing soluble compounds may be assayed for solubility in serum and the percent serum used specified here.
  33. This property will be measured when a sample of compound becomes available.

Calculated/Predicted Properties

Water Solubility Results
pH Sol,mg/ml 63+,64+ 66+ 64+,66+ Graph
2 1000 - - Cyclosporin a solubility.png
5.5 1000 - -
6.5 1000 - -
7.4 1000 - -
10 1000 - -
Summary Solubility Data
Intrinsic Solubility,mg/ml 1000
Intrinsic Solubility,log(S,mol/l) -8.0125E-2
Solubility in Pure Water at pH = 6.68,mg/ml 1000
Calculations performed using ACD/PhysChem v 9.14
LogD Results
pH LogD Graph
2 3.48 Cyclosporin a logd.png
5.5 3.48
6.5 3.48
7.4 3.48
10 3.48
Calculations performed using ACD/PhysChem v 9.14
Single-valued Properties
Property Value Units Error
LogP 3.48 0.97
MW 1202.61 -
PSA 278.8 -
FRB 16 -
HDonors 5 -
HAcceptors 23 -
Rule Of 5 3 -
Molar Refractivity 328.88 cm3 0.3
Molar Volume 1185.97 cm3 3
Parachor 2806.78 cm3 6
Index of Refraction 1.47 0.02
Surface Tension 31.37 dyne/cm 3
Density 1.01 g/cm3 0.06
Polarizability 130.38 10E-24 cm3 0.5
Calculations performed using ACD/PhysChem v 9.14
Property Name Value Units Source
pKa 9.45 SPARC v4.5
Estimated VP mm Hg EPI Suite v4.10
Estimated VP Pa EPI Suite v4.10
Estimated Water Solubility mg/L EPI Suite v4.10
WATERNT Frag Water Solubility Estimate mg/L EPI Suite v4.10
pKa Results
Acidic/Basic Acidic/Basic Aparrent pKa Value Error
66 A 15.79 0.7
74 A 13.86 0.2
65 A 13.62 0.7
64 A 13.44 0.7
A = Acidic
B = Basic
MA = Most Acidic
MB = Most Basic
Calculations performed using ACD/PhysChem v 9.14

Authors of this ToxBank wiki page

David Bower, Egon Willighagen, Matthew Clark
Facts about Cyclosporin ARDF feed
Accepted by ToxBankno  +
Accepted by ToxCastno  +
Equivalent URIThis property is a special property in this wiki.http://bio2rdf.org/drugbank_drugs:DB00091  +, http://bio2rdf.org/cas:59865-13-3  +, http://www.chemspider.com/Chemical-Structure.4447449.rdf  +, http://bio2rdf.org/pubchem:5284373  +, http://bio2rdf.org/dr:D00184  +, http://bio2rdf.org/chebi:15377  +, and http://rdf.openmolecules.net/?InChI=1S/C62H111N11O12/c1-25-27-28-40(15)52(75)51-56(79)65-43(26-2)58(81)67(18)33-48(74)68(19)44(29-34(3)4)55(78)66-49(38(11)12)61(84)69(20)45(30-35(5)6)54(77)63-41(16)53(76)64-42(17)57(80)70(21)46(31-36(7)8)59(82)71(22)47(32-37(9)10)60(83)72(23)50(39(13)14)62(85)73(51)24/h25,27,34-47,49-52,75H,26,28-33H2,1-24H3,(H,63,77)(H,64,76)(H,65,79)(H,66,78)  +
Has CAS59865-13-3  +
Has ChEBI Id15377  +
Has ChEMBL Id160  +
Has ChemSpider Id4447449  +
Has DrugBank IdDB00091  +
Has InChIwarning.pngString representation InChI=1S/C62H111N11O12/c1-25-27-28-40(15)5 <span class="smwwarning">[…]</span> -24H3,(H,63,77)(H,64,76)(H,65,79)(H,66,78) is too long.
Has InChIKeyPMATZTZNYRCHOR-UHFFFAOYSA-N  +
Has KEGG IdD00184  +
Has Leadscope IdLS-257  +
Has PubChem CID5284373  +
Has SmilesC1(N[C@H](C(N(CC(N([C@H](C(N[C@@H](C(C)C)C(=O)N([C@H](C(N[C@@H](C)C(=O)N[C@@H](C(N([C@@H](C(N([C@H](C(N([C@@H](CC(C)C)C(N([C@H]1[C@@H]([C@@H](\C=C\C)C)O)C)=O)C)=O)CC(C)C)C)=O)CC(C)C)C)=O)C)=O)CC(C)C)C)=O)CC(C)C)C)=O)C)=O)CC)=O  +
Has categoryHepatotoxic  +
Has imageCyclosporin_A.png  +
Has pKa9.45  +
Has targetcyclophilin  +
Has toxic effectCholestasis  +
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